3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05730

Details:

PFam ID : PF05730

PFam Domain Description : CFEM domain

Number of Sequence in 50% Dataset : 155

Number of Sequence in Full Dataset : 460

Average sequence length: 66.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05730	Q0V1F3_PHANO_20_117	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05730	Q0V1F3_PHANO_20_117	99.5

Sequence based PCA Plot of the family - PF05730 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=37

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay