3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05729

Details:

PFam ID : PF05729

PFam Domain Description : NACHT domain

Number of Sequence in 50% Dataset : 921

Number of Sequence in Full Dataset : 1915

Average sequence length: 165.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05729	Q466C8_METBF_5_66	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05729	A8L0E0_FRASN_395_560	99.8

Sequence based PCA Plot of the family - PF05729 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=7 Length=20
Motif2 Start=130 Length=8
Motif3 Start=86 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay