3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05728

Details:

PFam ID : PF05728

PFam Domain Description : Uncharacterised protein family (UPF0227)

Number of Sequence in 50% Dataset : 75

Number of Sequence in Full Dataset : 356

Average sequence length: 178.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05728	Q466C8_METBF_5_66	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05728	O67515_AQUAE_12_226	99.7

Sequence based PCA Plot of the family - PF05728 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=61 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay