3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05725

Details:

PFam ID : PF05725

PFam Domain Description : FNIP Repeat

Number of Sequence in 50% Dataset : 165

Number of Sequence in Full Dataset : 4704

Average sequence length: 42.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05725	Q8T4K1_DICDI_417_461	98.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05725	F0ZBY1_DICPU_209_266	99.9

Sequence based PCA Plot of the family - PF05725 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=38 Length=11
Motif2 Start=9 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay