3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05724

Details:

PFam ID : PF05724

PFam Domain Description : Thiopurine S-methyltransferase (TPMT)

Number of Sequence in 50% Dataset : 121

Number of Sequence in Full Dataset : 471

Average sequence length: 184.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05724	E9CE83_9EUKA_54_106	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05724	B8C323_THAPS_7_248	100

Sequence based PCA Plot of the family - PF05724 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=17
Motif2 Start=70 Length=8
Motif3 Start=183 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay