3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05722

Details:

PFam ID : PF05722

PFam Domain Description : Ustilago B locus mating-type protein

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 6

Average sequence length: 162.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05722	Q4A3G3_9BASI_206_457	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05722	A2IAY2_9BASI_9_140	100

Sequence based PCA Plot of the family - PF05722 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=228 Length=8
Motif4 Start=190 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay