3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05719

Details:

PFam ID : PF05719

PFam Domain Description : Golgi phosphoprotein 3 (GPP34)

Number of Sequence in 50% Dataset : 93

Number of Sequence in Full Dataset : 245

Average sequence length: 212.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05719	Q0SJE3_RHOSR_9_259	79.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05719	D3PT30_MEIRD_10_248	100

Sequence based PCA Plot of the family - PF05719 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=7 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay