3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05717

Details:

PFam ID : PF05717

PFam Domain Description : IS66 Orf2 like protein

Number of Sequence in 50% Dataset : 53

Number of Sequence in Full Dataset : 590

Average sequence length: 92.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05717	E9XEQ3_ECOLX_1_53	9.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05717	E9XEQ3_ECOLX_1_53	100

Sequence based PCA Plot of the family - PF05717 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=30 Length=8
Motif2 Start=12 Length=17
Motif3 Start=63 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay