3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05716

Details:

PFam ID : PF05716

PFam Domain Description : A-kinase anchor protein 110 kDa (AKAP 110)

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 31

Average sequence length: 268.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05716	C3YPR3_BRAFL_121_187	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05716	Q4R6L6_MACFA_134_407	100

Sequence based PCA Plot of the family - PF05716 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay