3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05714

Details:

PFam ID : PF05714

PFam Domain Description : Borrelia burgdorferi virulent strain associated lipoprotein

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 129

Average sequence length: 164.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05714	C0RQ69_9SPIO_28_216	25.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05714	C0RDG3_BORBU_1_208	92.9

Sequence based PCA Plot of the family - PF05714 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=26 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay