3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05713

Details:

PFam ID : PF05713

PFam Domain Description : Bacterial mobilisation protein (MobC)

Number of Sequence in 50% Dataset : 101

Number of Sequence in Full Dataset : 586

Average sequence length: 46.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05713	A3T3G0_9RHOB_89_135	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05713	E6I9A4_ENTFA_77_129	100

Sequence based PCA Plot of the family - PF05713 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=24 Length=8
Motif2 Start=6 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay