3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05712

Details:

PFam ID : PF05712

PFam Domain Description : MRG

Number of Sequence in 50% Dataset : 105

Number of Sequence in Full Dataset : 235

Average sequence length: 203.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05712	D3BU48_POLPA_108_157	92.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05712	Q8T774_BRAFL_52_451	100

Sequence based PCA Plot of the family - PF05712 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=148 Length=8
Motif2 Start=78 Length=8
Motif3 Start=26 Length=8
Motif4 Start=91 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay