3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05708

Details:

PFam ID : PF05708

PFam Domain Description : Orthopoxvirus protein of unknown function (DUF830)

Number of Sequence in 50% Dataset : 210

Number of Sequence in Full Dataset : 449

Average sequence length: 160.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05708	Q6MIS8_BDEBA_179_429	99.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05708	B0N627_9FIRM_55_225	99.3

Sequence based PCA Plot of the family - PF05708 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=21 Length=8
Motif2 Start=12 Length=8
Motif3 Start=3 Length=8
Motif4 Start=144 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay