3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05707

Details:

PFam ID : PF05707

PFam Domain Description : Zonular occludens toxin (Zot)

Number of Sequence in 50% Dataset : 110

Number of Sequence in Full Dataset : 197

Average sequence length: 180.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05707	A1APV2_PELPD_148_268	94.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05707	A1TPT2_ACIAC_1_238	100

Sequence based PCA Plot of the family - PF05707 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=25 Length=8
Motif2 Start=7 Length=17
Motif3 Start=160 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay