3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05706

Details:

PFam ID : PF05706

PFam Domain Description : Cyclin-dependent kinase inhibitor 3 (CDKN3)

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 81

Average sequence length: 130.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05706	Q23R35_TETTH_4_148	94.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05706	B3S0H8_TRIAD_54_130	98.7

Sequence based PCA Plot of the family - PF05706 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=159 Length=17
Motif3 Start=123 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay