3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05705

Details:

PFam ID : PF05705

PFam Domain Description : Eukaryotic protein of unknown function (DUF829)

Number of Sequence in 50% Dataset : 141

Number of Sequence in Full Dataset : 266

Average sequence length: 210.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05705	C1N155_MICPC_179_548	90

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05705	B9F2L0_ORYSJ_156_363	99.2

Sequence based PCA Plot of the family - PF05705 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay