3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05704

Details:

PFam ID : PF05704

PFam Domain Description : Capsular polysaccharide synthesis protein

Number of Sequence in 50% Dataset : 105

Number of Sequence in Full Dataset : 175

Average sequence length: 227.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05704	C5RZM4_9PAST_12_144	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05704	C9MZE6_9FUSO_31_331	100

Sequence based PCA Plot of the family - PF05704 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=25 Length=8
Motif3 Start=55 Length=8
Motif4 Start=109 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay