3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05703

Details:

PFam ID : PF05703

PFam Domain Description : Auxin canalisation

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 87

Average sequence length: 195.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05703	B9T6W9_RICCO_64_227	32

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05703	C5XJN3_SORBI_35_288	98.8

Sequence based PCA Plot of the family - PF05703 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay