3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05700

Details:

PFam ID : PF05700

PFam Domain Description : Breast carcinoma amplified sequence 2 (BCAS2)

Number of Sequence in 50% Dataset : 64

Number of Sequence in Full Dataset : 140

Average sequence length: 191.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05700	B5X6A9_SALSA_1_97	87.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05700	A8Q7Z1_MALGO_50_277	100

Sequence based PCA Plot of the family - PF05700 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=29 Length=8
Motif2 Start=11 Length=17
Motif3 Start=162 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay