3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05699

Details:

PFam ID : PF05699

PFam Domain Description : hAT family dimerisation domain

Number of Sequence in 50% Dataset : 235

Number of Sequence in Full Dataset : 1001

Average sequence length: 77.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05699	A2FWX0_TRIVA_2_75	78.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05699	E9J8B6_SOLIN_89_185	99.9

Sequence based PCA Plot of the family - PF05699 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=55 Length=8
Motif3 Start=73 Length=8
Motif4 Start=42 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay