3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05698

Details:

PFam ID : PF05698

PFam Domain Description : Bacterial trigger factor protein (TF) C-terminus

Number of Sequence in 50% Dataset : 385

Number of Sequence in Full Dataset : 1222

Average sequence length: 155.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05698	YCF2_HUPLU_1_241	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05698	Q1MXV3_9GAMM_264_348	99.9

Sequence based PCA Plot of the family - PF05698 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=113 Length=11
Motif2 Start=128 Length=8
Motif3 Start=39 Length=8
Motif4 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay