3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05694

Details:

PFam ID : PF05694

PFam Domain Description : 56kDa selenium binding protein (SBP56)

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 164

Average sequence length: 373.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05694	E0QM93_9ACTO_212_344	17.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05694	B7QHA6_IXOSC_15_85	98.7

Sequence based PCA Plot of the family - PF05694 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=111 Length=8
Motif2 Start=121 Length=8
Motif3 Start=67 Length=8
Motif4 Start=15 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay