3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05693

Details:

PFam ID : PF05693

PFam Domain Description : Glycogen synthase

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 302

Average sequence length: 345.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05693	E2M6L2_MONPE_1_127	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05693	F1RIP0_PIG_24_118	100

Sequence based PCA Plot of the family - PF05693 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=83 Length=8
Motif2 Start=36 Length=11
Motif3 Start=102 Length=8
Motif4 Start=12 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay