3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05692

Details:

PFam ID : PF05692

PFam Domain Description : Mycoplasma haemagglutinin

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 59

Average sequence length: 344.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05692	C0K132_MYCGA_202_273	52.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05692	D3FHD1_MYCGH_202_424	100

Sequence based PCA Plot of the family - PF05692 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=12 Length=8
Motif2 Start=267 Length=8
Motif3 Start=214 Length=8
Motif4 Start=93 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay