3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05690

Details:

PFam ID : PF05690

PFam Domain Description : Thiazole biosynthesis protein ThiG

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 701

Average sequence length: 234.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05690	A7MRS9_VIBHB_348_471	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05690	A0PYR6_CLONN_1_122	99.8

Sequence based PCA Plot of the family - PF05690 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=20
Motif2 Start=46 Length=8
Motif3 Start=34 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay