3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05686

Details:

PFam ID : PF05686

PFam Domain Description : Glycosyl transferase family 90

Number of Sequence in 50% Dataset : 182

Number of Sequence in Full Dataset : 601

Average sequence length: 248.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05686	B1WYE7_CYAA5_42_141	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05686	E9Q3R0_MOUSE_49_252	99.3

Sequence based PCA Plot of the family - PF05686 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=38 Length=8
Motif3 Start=77 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay