3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05683

Details:

PFam ID : PF05683

PFam Domain Description : Fumarase C-terminus

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 703

Average sequence length: 191.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05683	A7YY11_DANRE_2_102	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05683	F1T8U1_9CLOT_1_187	100

Sequence based PCA Plot of the family - PF05683 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=11 Length=11
Motif2 Start=132 Length=14
Motif3 Start=118 Length=11
Motif4 Start=54 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay