3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05681

Details:

PFam ID : PF05681

PFam Domain Description : Fumarate hydratase (Fumerase)

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 661

Average sequence length: 271.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05681	A7YY11_DANRE_2_102	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05681	C8PSZ3_9SPIO_28_353	100

Sequence based PCA Plot of the family - PF05681 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=221 Length=8
Motif2 Start=140 Length=18
Motif3 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay