3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05680

Details:

PFam ID : PF05680

PFam Domain Description : ATP synthase E chain

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 131

Average sequence length: 77.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05680	A7YY11_DANRE_2_102	78.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05680	C4R987_PICPG_1_92	100

Sequence based PCA Plot of the family - PF05680 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=28
Motif2 Start=72 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay