3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05679

Details:

PFam ID : PF05679

PFam Domain Description : Chondroitin N-acetylgalactosaminyltransferase

Number of Sequence in 50% Dataset : 94

Number of Sequence in Full Dataset : 197

Average sequence length: 354.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05679	C3ZR56_BRAFL_296_532	76.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05679	Q4SQA2_TETNG_449_582	100

Sequence based PCA Plot of the family - PF05679 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=78 Length=8
Motif2 Start=4 Length=28

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay