3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05678

Details:

PFam ID : PF05678

PFam Domain Description : VQ motif

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 227

Average sequence length: 30.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05678	B9H9N6_POPTR_42_66	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05678	B8B308_ORYSI_29_57	93.8

Sequence based PCA Plot of the family - PF05678 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=16 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay