3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05676

Details:

PFam ID : PF05676

PFam Domain Description : NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7)

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 95

Average sequence length: 63.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05676	A3GFZ6_PICST_13_74	16.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05676	B9W7T8_CANDC_8_73	100

Sequence based PCA Plot of the family - PF05676 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=1 Length=8
Motif3 Start=46 Length=11
Motif4 Start=19 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay