3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05671

Details:

PFam ID : PF05671

PFam Domain Description : GETHR pentapeptide repeat (5 copies)

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 5

Average sequence length: 18

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05671	B8M824_TALSN_8_105	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05671	P91183_CAEEL_30_51	100

Sequence based PCA Plot of the family - PF05671 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay