3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05670

Details:

PFam ID : PF05670

PFam Domain Description : Domain of unknown function (DUF814)

Number of Sequence in 50% Dataset : 59

Number of Sequence in Full Dataset : 874

Average sequence length: 90.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05670	B8M824_TALSN_8_105	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05670	C0BBP1_9FIRM_460_502	99.0

Sequence based PCA Plot of the family - PF05670 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=13 Length=18
Motif2 Start=67 Length=11
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay