3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05666

Details:

PFam ID : PF05666

PFam Domain Description : Fels-1 Prophage Protein-like

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 47

Average sequence length: 46.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05666	B8BG59_ORYSI_201_313	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05666	C4USM3_YERRO_21_61	60

Sequence based PCA Plot of the family - PF05666 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=12 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay