3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05662

Details:

PFam ID : PF05662

PFam Domain Description : Haemagglutinin

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 820

Average sequence length: 22.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05662	Q6LGY0_PHOPR_1_96	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05662	C9TDY3_9RHIZ_630_650	99.2

Sequence based PCA Plot of the family - PF05662 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay