3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05660

Details:

PFam ID : PF05660

PFam Domain Description : Coxiella burnetii protein of unknown function (DUF807)

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 5

Average sequence length: 108.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05660	A9N8C5_COXBR_1_142	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05660	Q799C8_COXBU_4_115	100

Sequence based PCA Plot of the family - PF05660 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=94 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay