3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05659

Details:

PFam ID : PF05659

PFam Domain Description : Arabidopsis broad-spectrum mildew resistance protein RPW8

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 69

Average sequence length: 128.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05659	D7TYX3_VITVI_734_799	39.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05659	B9HE80_POPTR_1_148	100

Sequence based PCA Plot of the family - PF05659 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay