3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05653

Details:

PFam ID : PF05653

PFam Domain Description : Magnesium transporter NIPA

Number of Sequence in 50% Dataset : 130

Number of Sequence in Full Dataset : 542

Average sequence length: 211.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05653	Q5DGH0_SCHJA_42_172	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05653	Q83GH7_TROWT_2_279	98.5

Sequence based PCA Plot of the family - PF05653 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=32 Length=8
Motif2 Start=23 Length=8
Motif3 Start=14 Length=8
Motif4 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay