3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05644

Details:

PFam ID : PF05644

PFam Domain Description : Mitochondrial and peroxisomal fission factor Mff

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 53

Average sequence length: 157.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05644	A7SJ43_NEMVE_4_232	70

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05644	E1FMJ2_LOALO_1_117	100

Sequence based PCA Plot of the family - PF05644 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=15 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay