3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05641

Details:

PFam ID : PF05641

PFam Domain Description : Agenet domain

Number of Sequence in 50% Dataset : 58

Number of Sequence in Full Dataset : 198

Average sequence length: 69.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05641	A3BYP9_ORYSJ_454_515	89.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05641	Q9LUZ5_ARATH_26_110	99.4

Sequence based PCA Plot of the family - PF05641 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=27 Length=18
Motif2 Start=1 Length=8
Motif3 Start=18 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay