3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05640

Details:

PFam ID : PF05640

PFam Domain Description : Na,K-Atpase Interacting protein

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 56

Average sequence length: 152.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05640	B0WMR0_CULQU_45_142	29.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05640	A7T4W4_NEMVE_1_110	98.1

Sequence based PCA Plot of the family - PF05640 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=17 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay