3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05637

Details:

PFam ID : PF05637

PFam Domain Description : galactosyl transferase GMA12/MNN10 family

Number of Sequence in 50% Dataset : 77

Number of Sequence in Full Dataset : 303

Average sequence length: 201.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05637	C9SIB7_VERA1_159_243	80.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05637	B2A4H0_NATTJ_8_107	100

Sequence based PCA Plot of the family - PF05637 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=96 Length=8
Motif2 Start=1 Length=8
Motif3 Start=39 Length=8
Motif4 Start=311 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay