3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05636

Details:

PFam ID : PF05636

PFam Domain Description : HIGH Nucleotidyl Transferase

Number of Sequence in 50% Dataset : 167

Number of Sequence in Full Dataset : 372

Average sequence length: 352.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05636	Q2NHZ4_METST_189_370	92.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05636	C0EXQ8_9FIRM_37_482	100

Sequence based PCA Plot of the family - PF05636 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=148 Length=8
Motif2 Start=16 Length=8
Motif3 Start=95 Length=8
Motif4 Start=121 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay