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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05630
Details:

PFam ID : PF05630

PFam Domain Description : Necrosis inducing protein (NPP1)

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 169

Average sequence length: 177.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF05630D0NRT4_PHYIT_2_12781.5
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF05630B2ATA7_PODAN_1_129100
Sequence based PCA Plot of the family - PF05630 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=130 Length=8
Motif2 Start=18 Length=8
Motif3 Start=88 Length=8
Motif4 Start=70 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay