3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05630 Details: PFam ID : PF05630 PFam Domain Description : Necrosis inducing protein (NPP1) Number of Sequence in 50% Dataset : 39 Number of Sequence in Full Dataset : 169 Average sequence length: 177.6 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF05630D0NRT4_PHYIT_2_12781.5 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF05630B2ATA7_PODAN_1_129100 Sequence based PCA Plot of the family - PF05630 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 4 motifsMotif1 Start=130 Length=8Motif2 Start=18 Length=8Motif3 Start=88 Length=8Motif4 Start=70 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF05630
PFam Domain Description : Necrosis inducing protein (NPP1)
Number of Sequence in 50% Dataset : 39
Number of Sequence in Full Dataset : 169
Average sequence length: 177.6
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER