3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05628

Details:

PFam ID : PF05628

PFam Domain Description : Borrelia membrane protein P13

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 38

Average sequence length: 107.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05628	Q73PB0_TREDE_65_214	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05628	Q0SLR3_BORAP_1_84	100

Sequence based PCA Plot of the family - PF05628 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay