3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05627

Details:

PFam ID : PF05627

PFam Domain Description : Cleavage site for pathogenic type III effector avirulence factor Avr

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 115

Average sequence length: 36.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05627	B9SMN3_RICCO_7_35	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05627	D7UE62_VITVI_160_189	93.8

Sequence based PCA Plot of the family - PF05627 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=5 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay