3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05622

Details:

PFam ID : PF05622

PFam Domain Description : HOOK protein

Number of Sequence in 50% Dataset : 76

Number of Sequence in Full Dataset : 173

Average sequence length: 494.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05622	D3B8W2_POLPA_313_630	61.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05622	E9ISS9_SOLIN_4_692	99.4

Sequence based PCA Plot of the family - PF05622 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=101 Length=8
Motif2 Start=10 Length=8
Motif3 Start=274 Length=8
Motif4 Start=639 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay