3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05621

Details:

PFam ID : PF05621

PFam Domain Description : Bacterial TniB protein

Number of Sequence in 50% Dataset : 52

Number of Sequence in Full Dataset : 86

Average sequence length: 237.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05621	A9EGN0_9RHOB_1_74	68.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05621	Q39R61_GEOMG_2_303	100

Sequence based PCA Plot of the family - PF05621 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=20 Length=8
Motif2 Start=1 Length=8
Motif3 Start=144 Length=8
Motif4 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay