3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05616

Details:

PFam ID : PF05616

PFam Domain Description : Neisseria meningitidis TspB protein

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 56

Average sequence length: 223.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05616	E0N6U4_NEIME_1_47	70

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05616	C0EM97_NEIFL_1_336	100

Sequence based PCA Plot of the family - PF05616 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=11
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay